Pumpkin Cream Cheese Muffins

Featured in: Classic American Desserts

Enjoy soft and flavorful muffins combining spiced pumpkin batter with a rich cream cheese center. These muffins deliver autumn comfort in every bite and are simple to prepare with basic pantry ingredients. Each bite blends warm spices like cinnamon and nutmeg with a creamy, slightly tangy filling. Ideal for breakfast, snack time, or seasonal gatherings. Top with pumpkin seeds or pecans for added crunch and visual appeal. Serve freshly baked or keep refrigerated for a quick, satisfying treat all week long.

Updated on Tue, 09 Sep 2025 20:40:32 GMT
Fresh-baked pumpkin cream cheese muffins with a creamy center, topped with crunchy pecans. Save
Fresh-baked pumpkin cream cheese muffins with a creamy center, topped with crunchy pecans. | epicurestates.com

These pumpkin cream cheese muffins capture the warm aroma and flavor of fall in every bite. With a silky cream cheese center surrounded by spiced, tender pumpkin batter, these are a treat I return to every October whenever pumpkins hit the market. Whether for a crisp morning with coffee or a sweet afternoon snack, they come together easily and feel extra festive. If you’ve been craving bakery-worthy pumpkin muffins without any fuss, you’re in for a real treat.

I first made these for a Sunday brunch potluck and they completely vanished I was asked to share the recipe at least six times and my kids still cheer when they find one in their lunchbox

Ingredients

  • Cream cheese: delivers a tangy creamy center Be sure to use full-fat for flavor and texture
  • Granulated sugar: brings sweetness and helps blend the filling Choose organic cane sugar for the freshest taste
  • Vanilla extract: rounds out both batter and filling with rich bakery aroma Look for pure vanilla for best results
  • All-purpose flour: forms the main structure Sift for lighter muffins
  • Baking soda and baking powder: are essential for a lovely lift Make sure they are fresh and active
  • Salt: sharpens flavors and balances all the sweetness Kosher salt is a reliable choice
  • Ground cinnamon: gives that familiar pumpkin spice warmth Buy from a fresh source so it is fragrant
  • Nutmeg, cloves, and ginger: create deep, layered spice Use whole spices and grind fresh if you can
  • Canned pumpkin purée: bestows a hearty, velvety crumb Opt for pure pumpkin only
  • Vegetable oil: keeps the crumb lush and moist Use neutral oils like grapeseed
  • Brown sugar: adds a hint of molasses depth Pick soft, moist packed brown sugar
  • Eggs: bind and enrich the muffins Fresh large eggs hold everything together
  • Optional pumpkin seeds or chopped pecans: provide crunch and visual appeal Toast lightly before using for extra aroma

Instructions

Preheat and Prep:
Preheat your oven to one hundred eighty degrees Celsius and get your muffin tin ready with liners or a light coating of oil Arranging everything ahead cuts down on mess and stress
Mix the Cream Cheese Filling:
Take a medium bowl and gently whip cream cheese with sugar and vanilla using a handheld mixer or whisk The result should be silken with no lumps whatsoever This makes the creamy pocket that everyone loves to find inside
Combine the Dry Ingredients:
In a large mixing bowl whisk together the flour baking soda baking powder salt cinnamon nutmeg cloves and ginger Mixing thoroughly now spreads the spices evenly for a consistent muffin in every bite
Whisk the Wet Ingredients:
Now take another bowl and combine the pumpkin purée oil brown sugar granulated sugar eggs and vanilla Whisk until the mixture is uniform and smooth This is the secret behind the muffins’ tender crumb
Bring the Batter Together:
Add the wet mixture to the dry and fold gently with a spatula Stop mixing as soon as you no longer see flour streaks Overmixing leads to tough muffins so handle gently
Fill the Muffin Cups:
Spoon just about two tablespoons of batter into each prepared muffin cup Spread it to cover the bottom evenly
Add the Cream Cheese Center:
Drop a heaping teaspoon of your cream cheese mixture right in the center of each batter pool Give it a soft push so it sinks in but does not touch the bottom
Top With Remaining Batter:
Scoop and gently cover each cream cheese center with more pumpkin batter Make sure the cream cheese is completely hidden but do not overfill
Sprinkle the Topping:
If using pumpkin seeds or pecans scatter them on top for crunch and color You can also add a pinch of raw sugar for sparkle
Bake to Perfection:
Transfer to the oven and bake on the center rack for twenty to twenty two minutes Muffins are done when puffed fragrant and a toothpick at the edge comes out clean It is normal for the center to feel slightly soft
Cool and Enjoy:
Allow muffins to cool in the tin for about ten minutes before transferring to a rack Cooling is important as it helps the cream cheese filling set
Pumpkin cream cheese muffins on a rustic cooling rack, perfect for a cozy fall breakfast. Save
Pumpkin cream cheese muffins on a rustic cooling rack, perfect for a cozy fall breakfast. | epicurestates.com

I love using local farm stand pumpkin in these because it creates an even richer flavor My son always wants to be in charge of the cream cheese centers and seeing his little hands work makes the process extra special to me

Storage Tips

Once fully cooled keep muffins in an air-tight container in the fridge Their cream cheese centers stay safe and the texture stays just right You can let them come back to room temperature or even enjoy them slightly chilled They retain their soft crumb for four days and can be frozen for up to three months I like to wrap each one individually in wax paper for lunchbox packing

Ingredient Substitutions

You can easily swap the pecans with sunflower seeds if you need to be nut free For dairy-free versions use a plant-based cream cheese and replace eggs with flax eggs The recipe still gives a beautiful lift and deep flavor Play with spices by adding cardamom or switching out cloves if that is not your favorite

Serving Suggestions

They are a natural match for anything warm and spiced I love serving them with chai or spiced tea Serve on a brunch board with fresh fruit and a dollop of whipped cream for a festive fall breakfast Or pack one into a lunchbox with apple slices for a filling snack

Cultural and Seasonal Context

Pumpkin muffins are a classic of American fall baking because they use up the season’s most celebrated vegetable Their warm spices harken back to pies of Thanksgiving and harvest feasts The cream cheese center is a nod to the cheesecake craze that swept coffee shops in the last decade Make these whenever you want your kitchen filled with autumn vibes

Close-up of moist pumpkin cream cheese muffins bursting with spiced aroma and creamy filling. Save
Close-up of moist pumpkin cream cheese muffins bursting with spiced aroma and creamy filling. | epicurestates.com

These muffins are sure to bring a festive, cozy touch to your table. Enjoy them all autumn long with family and friends.

Recipe FAQs

How do I keep the cream cheese center from sinking?

Ensure batter covers the cream cheese completely and use just a heaping teaspoon per muffin for best results.

Can I substitute fresh pumpkin for canned purée?

Yes, use equal amounts of homemade pumpkin purée that's been well-drained for proper texture.

What are good topping alternatives?

Try pumpkin seeds, chopped pecans, or a sprinkle of cinnamon sugar for extra flavor and texture.

How should I store these muffins?

Keep muffins refrigerated in an airtight container for up to 4 days, and bring to room temperature before enjoying.

Can I make these muffins gluten-free?

Use a 1:1 gluten-free flour blend in place of all-purpose flour for a similar result.

Are there mix-in options for extra flavor?

Add mini chocolate chips or dried cranberries to the batter for a delightful twist.

Pumpkin Cream Cheese Muffins

Soft pumpkin muffins with a creamy, spiced center—perfect for autumn breakfasts or snacks.

Prep duration
20 min
Cook duration
22 min
Complete duration
42 min


Complexity Easy

Heritage American

Output 12 Portions

Dietary considerations Meat-free

Components

Cream Cheese Filling

01 4 ounces cream cheese, softened
02 1/4 cup granulated sugar
03 1/2 teaspoon vanilla extract

Pumpkin Muffin Batter

01 1 3/4 cups all-purpose flour
02 1 teaspoon baking soda
03 1/2 teaspoon baking powder
04 1/2 teaspoon salt
05 1 1/2 teaspoons ground cinnamon
06 1/2 teaspoon ground nutmeg
07 1/4 teaspoon ground cloves
08 1/4 teaspoon ground ginger
09 1 cup canned pumpkin purée
10 1/2 cup vegetable oil
11 1/2 cup packed brown sugar
12 1/4 cup granulated sugar
13 2 large eggs
14 1 teaspoon vanilla extract

Optional Topping

01 2 tablespoons pumpkin seeds (pepitas) or chopped pecans

Directions

Phase 01

Prepare Oven and Muffin Tin: Preheat oven to 350°F. Line a 12-cup muffin tin with paper liners or lightly grease each cup.

Phase 02

Mix Cream Cheese Filling: In a medium bowl, beat together the cream cheese, granulated sugar, and vanilla extract until smooth. Set aside.

Phase 03

Combine Dry Ingredients: In a large mixing bowl, whisk together the all-purpose flour, baking soda, baking powder, salt, cinnamon, nutmeg, cloves, and ginger until well blended.

Phase 04

Blend Wet Ingredients: In a separate bowl, whisk together pumpkin purée, vegetable oil, brown sugar, granulated sugar, eggs, and vanilla extract until fully incorporated.

Phase 05

Combine Wet and Dry Mixtures: Add the wet ingredients to the dry ingredients and stir gently, mixing just until the batter is combined. Avoid overmixing.

Phase 06

Portion Batter: Spoon about 2 tablespoons of batter into each prepared muffin cup.

Phase 07

Add Cream Cheese Filling: Drop a heaping teaspoon of the cream cheese mixture into the center of each muffin cup, pressing slightly to sink the filling.

Phase 08

Cover and Top: Spoon the remaining pumpkin batter over the cream cheese filling, ensuring the filling is completely covered. If desired, sprinkle pumpkin seeds or chopped pecans on top.

Phase 09

Bake: Bake for 20 to 22 minutes, or until the muffins are set and a toothpick inserted into the cake portion (not the center) comes out clean.

Phase 10

Cool and Serve: Allow muffins to cool in the pan for 10 minutes, then transfer to a wire rack to cool completely before serving.

Necessary tools

  • 12-cup muffin tin
  • Mixing bowls
  • Electric mixer or whisk
  • Measuring cups and spoons
  • Spatula

Allergy details

Review each component for potential allergens and consult with healthcare professionals if you're uncertain.
  • Contains wheat (gluten), eggs, and dairy (cream cheese). If topped with pecans, contains tree nuts. Examine packaging for potential hidden allergens.

Nutritional information (each portion)

These values are offered as a general guide and shouldn't replace professional medical guidance.
  • Energy: 235
  • Fat: 11 g
  • Carbohydrates: 30 g
  • Protein: 4 g